import uuid # For UUID creation from initDb import initDb # For database initialization from wisski.api import Api, Pathbuilder, Entity # For WissKI API import os # For environment variable loading from dotenv import load_dotenv # For environment variable loading import pandas as pd # For dataframe handling def importArtifactToLiteratureReferenceAssignmentRelation(api, engine): print('importing artifact to literature reference assignment relation') tableName = "r__obj__8330_lit_kurzt_" bundleId = 'b6a7b7aad942ecff4b3beadf907d51c8' # Artifact to literature relation try: processedRows = pd.read_csv(f'./logs/{tableName}.csv') except FileNotFoundError: processedRows = pd.DataFrame(columns=[ 'id', 'uuid', 'uri']) # Load sources table sqlTable = pd.read_sql_table(tableName, con=engine) entityValues = {} # Create entities for index, row in sqlTable.iterrows(): # For every row in table... if index < len(processedRows) and sqlTable.loc[index, 'id'] == processedRows.loc[index, 'id']: # skip if already processed print(f'Skipping already processed entity {sqlTable.loc[index, "id"]}') continue # Create Entity property dicts entityValues = {} for key, value in row.items(): # For every column in row... if (value is None) or (value == ''): # skip if cell has no value continue # Properties of an entity have to be an array, so... value = str(value).replace('&###{{new_line}}###'.format(), '&') value = str(value).replace('###{{new_line}}###', '&') value = str(value).replace(' & ', '&') if '&' in str(value): # ...Explode "&"-separated values to array items value = [x.strip() for x in str(value).split('&')] else: # ...Or parse to array value = [value] # Map columns to fields. We use assignments for reification. docId = '' match key: case 'id': docId = value[0] case 'f__obj__uuid': entityValues['f6c41b894b0a00c2c28860f513c5bb77'] = value # Artifact UUID fUuid = value[0] case 'f__8330_lit_kurzt___uuid': entityValues['f5284765cef8e6974676adcb59791960'] = value # case _: print(f'{key} is not a valid field, skipping.') # Create Material entity = Entity(api=api, fields=entityValues, bundle_id=bundleId) api.save(entity) print(f'Created Artifact to Literature Reference Assignment Relation {index}: {entity.uri} of {len(sqlTable)}') # Write log processedRows = processedRows._append({'id': row['id'], 'uuid': fUuid, 'uri': entity.uri}, ignore_index=True) processedRows.to_csv(f'./logs/{tableName}.csv', index=False) print('finished importing artifact to literature reference assignment relation')