Remove embed package

This commit finally removes the embed package in favor of more specific
resource packages

core/bootstrap.go

@@ -0,0 +1,15 @@
+package core
+
+import _ "embed"
+
+// DefaultOverridesJSON contains a template for a new 'overrides.json' file
+//go:embed bootstrap/overrides.json
+var DefaultOverridesJSON []byte
+
+// DefaultAuthorizedKeys contains a template for a new 'global_authorized_keys' file
+//go:embed bootstrap/global_authorized_keys
+var DefaultAuthorizedKeys []byte
+
+// ConfigFileTemplate contains a template for a new configuration file
+//go:embed bootstrap/env
+var ConfigFileTemplate []byte

core/bootstrap/env

@@ -0,0 +1,63 @@
+# Several docker-compose files are created to manage global services and the system itself. 
+# On top of this all real-system space will be created under this directory.  
+DEPLOY_ROOT=${DEPLOY_ROOT}
+
+# Each created Drupal Instance corresponds to a single domain name. 
+# These domain names should either be a complete domain name or a sub-domain of a default domain. 
+# This setting configures the default domain-name to create subdomains of. 
+DEFAULT_DOMAIN=${DEFAULT_DOMAIN}
+
+# By default, the default domain redirects to the distillery repository. 
+# If you want to change this, set an alternate domain name here. 
+SELF_REDIRECT=
+
+# By default, only the 'self' domain above is caught.
+# To catch additional domains, add them here (comma seperated)
+SELF_EXTRA_DOMAINS=
+
+# You can override individual URLS in the homepage. 
+# Do this by adding URLs (without trailing '/'s) into a JSON file
+SELF_OVERRIDES_FILE=${SELF_OVERRIDES_FILE}
+
+# The system can support setting up certificate(s) automatically. 
+# It can be enabled by setting an email for certbot certificates. 
+# This email address can be configured here. 
+CERTBOT_EMAIL=
+
+# The maximum age (in days) for backups to be kept. 
+# Backups older than this will be removed when a new backup is made.
+MAX_BACKUP_AGE=30
+
+
+# Each Drupal instance requires a corresponding system user, database users and databases. 
+# These are also set by the appropriate domain name. 
+# To differentiate them from other users of the system, these names can be prefixed. 
+# The prefix to use can be configured here. 
+# When changing these please consider that no system user may exist that has the same name as a mysql user. 
+# This is a MariaDB restriction. 
+MYSQL_USER_PREFIX=mysql-factory-
+MYSQL_DATABASE_PREFIX=mysql-factory-
+GRAPHDB_USER_PREFIX=graphdb-factory-
+GRAPHDB_REPO_PREFIX=graphdb-factory-
+
+# In addition to the filesystem the WissKI distillery requires a single SQL table. 
+# It uses this database to store a list of installed things
+DISTILLERY_BOOKKEEPING_DATABASE=distillery
+DISTILLERY_BOOKKEEPING_TABLE=distillery
+
+
+# Various components use password-based-authentication. 
+# These passwords are generated automatically. 
+# This variable can be used to determine their length. 
+PASSWORD_LENGTH=64
+
+# A file to be used for global authorized_keys for the ssh server.
+GLOBAL_AUTHORIZED_KEYS_FILE=${AUTHORIZED_KEYS_FILE}
+
+# The admin user and password of the GraphDB interface, to be used for queries
+GRAPHDB_ADMIN_USER=${GRAPHDB_ADMIN_USER}
+GRAPHDB_ADMIN_PASSWORD=${GRAPHDB_ADMIN_PASSWORD}
+
+# The admin password to use for access to mysql
+MYSQL_ADMIN_USER=${MYSQL_ADMIN_USER}
+MYSQL_ADMIN_PASSWORD=${MYSQL_ADMIN_PASSWORD}

core/bootstrap/global_authorized_keys

@@ -0,0 +1,2 @@
+# This file contains authorized_keys files valid for every repository in the distillery
+# The syntax of this file is easy, one key per line, empty lines or those starting with '#' are ignored

core/bootstrap/overrides.json

@@ -0,0 +1 @@
+{}

core/runtime.go

@@ -0,0 +1,10 @@
+package core
+
+import (
+	"embed"
+	_ "embed"
+)
+
+// Runtime contains runtime resources to be installed into any instance
+//go:embed all:runtime
+var Runtime embed.FS

core/runtime/README

@@ -0,0 +1,2 @@
+Files in this folder are utility scripts to be used from within individual WissKI instances. 
+They are mounted under runtime/ and should be used with care. 

core/runtime/blind_update.sh

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+#!/bin/bash
+
+# This utility script can be used to blindly update all dependencies to their latest versions. 
+# It does not perform any checking whatsoever. 
+
+# update the main modules
+cd /var/www/data/project || exit 1
+chmod u+rw web/sites/default/
+composer update
+
+# update the db
+drush -y updatedb
+
+# update the wisski dependencies
+cd /var/www/data/project/web/modules/contrib/wisski || exit 1
+composer update

core/runtime/create_admin.sh

@@ -0,0 +1,25 @@
+#!/bin/sh
+set -e
+
+# read user
+USER=$1
+if [ -z "$USER" ]; then
+    echo "Usage: create_admin.sh USERNAME"
+    exit 1
+fi
+
+# read password
+echo "Enter Password for $USER:"
+read -s PASS
+echo "Enter the same password again:"
+read -s PASS2
+
+if [ "$PASS" != "$PASS2" ]; then
+    echo "Passwords not equal"
+    exit 1
+fi;
+
+# create the user and add the admin role
+cd /var/www/data/project/
+drush user:create "$USER" --password="$PASS"
+drush user-add-role administrator "$USER"

core/runtime/cron.sh

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+#!/bin/bash
+
+# This utility script can be used to run all cron tasks. 
+
+cd /var/www/data/project || exit 1
+export PATH=/var/www/data/project/vendor/bin:$PATH
+
+drush core-cron

core/runtime/install_colorbox.sh

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+#!/bin/bash
+set -e
+
+# make a temporary directory and cd into it
+TEMPDIR=$(mktemp -d)
+pushd "$TEMPDIR"
+
+# curl the colorbox zip and unpack it
+curl -L https://github.com/jackmoore/colorbox/archive/master.zip --output master.zip
+unzip master.zip
+
+# make the directory for libraries, and remove the old colorbox installation
+chmod u+rw /var/www/data/project/web/sites/default/
+mkdir -p /var/www/data/project/web/sites/default/libraries/
+rm -rf /var/www/data/project/web/sites/default/libraries/colorbox
+
+# copy over the new installation
+mv colorbox-master/ /var/www/data/project/web/sites/default/libraries/colorbox
+
+# cleanup
+popd
+rm -rf "$TEMPDIR"

core/runtime/patch_easyrdf.sh

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+#!/bin/sh
+
+# This script can be used to repatch EasyRDF when needed. 
+cd /var/www/data/project/web/modules/contrib/wisski || exit 1
+EASYRDF_RESPONSE="./vendor/easyrdf/easyrdf/lib/EasyRdf/Http/Response.php"
+patch -N "$EASYRDF_RESPONSE" < "/patch/easyrdf.patch"

core/runtime/patch_triples.sh

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+#!/bin/sh
+
+# This script can be used to repatch EasyRDF when needed. 
+cd /var/www/data/project/web/modules/contrib/wisski/ || exit 1
+TRIPLESTABCONTROLLER="./wisski_adapter_sparql11_pb/src/Controller/Sparql11TriplesTabController.php"
+patch -N "$TRIPLESTABCONTROLLER" < "/patch/triples.patch"

core/runtime/use_wisski.sh

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+#!/bin/bash
+set -e
+
+# read user
+VERSION=$1
+if [ -z "$VERSION" ]; then
+    echo "Usage: use_wisski.sh VERSION"
+    exit 1
+fi
+
+# update the main modules
+cd /var/www/data/project
+chmod u+rw web/sites/default/
+composer require "drupal/wisski:$VERSION"
+
+# update the wisski dependencies
+pushd /var/www/data/project/web/modules/contrib/wisski
+composer update
+popd
+
+# update the db
+drush -y updatedb

core/runtime/wisski_2x_3x.sh

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+#!/bin/bash
+set -e
+
+# temporarily extend permissions
+chmod 777 web/sites/default
+chmod 666 web/sites/default/*settings.php
+chmod 666 web/sites/default/*services.yml
+
+# update the core itself
+composer require 'drupal/core-recommended:^9' 'drupal/core-composer-scaffold:^9' 'drupal/core-project-message:^9' --update-with-dependencies --no-update
+composer update
+composer require 'drupal/wisski'
+
+# update requirements for wisski!
+pushd web/modules/contrib/wisski || exit 1
+composer update
+popd || exit 1
+
+# run the update and clear the cache!
+drush updatedb --yes
+# drush cc
+
+# and reset everything back to normal
+chmod 755 web/sites/default
+chmod 644 web/sites/default/*settings.php
+chmod 644 web/sites/default/*services.yml